- MOLGEN - http://www.mathe2.uni-bayreuth.de/molgen4/
- Program for the automatic generation of constitutional isomers and combinatorial libraries, for Unix/Linux and WinNT/95. Free demo available.
- Mol2Mol - http://web.interware.hu/frenzy/mol2mol/index.html
- Molecule file manipulation and conversion shareware for Windows. Works with about 40 file formats. Screenshots, downloads, and purchasing information.
- Marvin - http://www.chemaxon.com/marvin/
- Java applets for the web developer who builds chemical internet/intranet sites. The package includes an applet for editing and visualizing molecules on a web page and one for viewing molecules on a web page.
- Hyleos ChemFileBrowser and ChemView - http://www.hyleos.net
- Free Windows software for working with MDL SDF files and molfiles. Includes descriptors calculation like TPSA, molecular weight, HBd and HBa.
- Molecule for Macintosh - http://www.chemie.uni-erlangen.de/ccc/hommes/molecule/
- Structure editor. Especially suited for computational chemistry, supports several file formats and operations such as animations and optimizations. License fee required.
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